SBML for optimizing decision support's tools
نویسندگان
چکیده
Many theoretical works and tools on epidemiological field reflect the emphasis on decision-making tools by both public health and the scientific community, which continues to increase. Indeed, in the epidemiological field, modeling tools are proving a very important way in helping to make decision. However, the variety, the large volume of data and the nature of epidemics lead us to seek solutions to alleviate the heavy burden imposed on both experts and developers. In this paper, we present a new approach: the passage of an epidemic model realized in Bio-PEPA to a narrative language using the basics of SBML language. Our goal is to allow on one hand, epidemiologists to verify and validate the model, and the other hand, developers to optimize the model in order to achieve a better model of decision making. We also present some preliminary results and some suggestions to improve the simulated model.
منابع مشابه
semanticsSBML 2.0 - A Collection of Online Services for SBML Models
SBML (Systems Biology Markup Language) models of biochemical network models are a fast, efficient, and widely spread effort in analyzing pathways and networks. Vast amounts of software tools provide the handling of SBML files. semanticSBML 2.0 is an advanced, improved, and extended version of the systems biology tool semanticSBML. While the latter had to be downloaded, installed and furthermore...
متن کاملTools for the SBML Community
MOTIVATION SBML is quickly becoming the standard format to exchange biochemical models. The tools presented in this paper are loosely-coupled, and are intended to be incorporated into SBML aware applications. The rationale for this is to reduce the amount of repeated work carried out within the community and to create tools that offer a greater number of features to the end-user. AVAILABILITY...
متن کاملRepresentation of Biochemical Pathway Models
Background: Computational simulation of complex biological networks lies at the heart of systems biology since it can confirm the conclusions drawn by experimental studies of biological networks and guide researchers to produce fresh hypotheses for further experimental validation. Since this iterative process helps in development of more realistic system models a variety of computational tools ...
متن کاملA model diagram layout extension for SBML
MOTIVATION Since the knowledge about processes in living cells is increasing, modelling and simulation techniques are used to get new insights into these complex processes. During the last few years, the SBML file format has gained in popularity and support as a means of exchanging model data between the different modelling and simulation tools. In addition to specifying the model as a set of e...
متن کاملTowards a Complete Covering of SBML Functionalities
The complexity of biological systems is at times made worse by the diversity of ways in which they are described: the organic evolution of the science over many years has led to a myriad of conventions. This confusion is reflected by the in-silico representation of biological models, where many different computational paradigms and formalisms are used in a variety of software tools. The Systems...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- CoRR
دوره abs/1311.3837 شماره
صفحات -
تاریخ انتشار 2013